Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL10_chr5_176360487_176386909	0/0	t0198	10111	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0199	10063	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0200	10059	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0201	10056	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0202	10103	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0203	10108	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0204	10087	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0205	10087	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0206	10089	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0207	10054	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0208	10107	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0209	10113	1	0	0	0	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0210	10107	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0211	10106	1	0	0	0	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0212	10111	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0213	10107	1	0	0	0	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0214	10106	1	0	0	0	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0215	10099	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0216	10094	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0217	10097	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0218	10099	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0219	10110	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0220	10093	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0221	10098	1	0	0	0	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL11_chr13_49623507_49638872	1/0	t0001	2962	212	57	33	98	5	18	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/1	t0002	2962	95	6	32	39	6	11	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0003	2962	32	2	1	23	1	5	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0004	2962	28	0	2	20	0	6	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0005	2965	19	0	3	15	1	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0006	2949	18	3	3	5	1	6	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0007	2962	12	12	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0008	2962	10	8	2	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0009	2964	6	0	0	6	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0010	2962	5	4	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0011	2962	2	0	0	2	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0012	2949	2	0	0	0	2	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0013	2962	2	0	2	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0014	2962	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0015	2962	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0016	2947	1	0	0	0	0	1	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0017	2962	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0018	2964	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0019	2962	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0020	2962	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0021	2949	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0022	2962	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0023	2962	1	0	0	0	0	1	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0024	2962	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0025	2949	1	0	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	t0026	2962	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872