JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NCS1_chr9_130167404_130242303	0/0	t0116	4594	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0117	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0118	4593	1	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0119	4593	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0120	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0121	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0122	4594	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0123	4592	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0124	4593	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0125	4593	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0126	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0127	4594	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0128	4594	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0129	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0130	4593	1	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0131	4592	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0132	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0133	4593	1	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0134	4592	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0135	4592	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0136	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0137	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0138	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0139	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0140	4593	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0141	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0142	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0143	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0144	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0145	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0146	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0147	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0148	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0149	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0150	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0151	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0152	4594	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0153	4592	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0154	4594	1	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0155	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0156	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0157	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0158	4593	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0159	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0160	4593	1	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0161	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0162	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0163	4593	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0164	4592	1	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0165	4592	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303