JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCS1_chr9_130167404_130242303	0/0	t0166	4592	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0167	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0168	4593	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0169	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0170	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0171	4592	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0172	4593	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0173	4594	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0174	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0175	4593	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0176	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0177	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0178	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0179	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0180	4593	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0181	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0182	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0183	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0184	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0185	4593	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0186	4594	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0187	4594	1	0	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0188	4595	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0189	4593	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0190	4594	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0191	4594	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0192	4594	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0193	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0194	4594	1	0	0	0	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0195	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0196	4594	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0197	4593	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/1	t0198	4593	1	0	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0199	4592	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0200	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0201	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCSTN_chr1_160338383_160363949	1/1	t0001	693	414	82	66	205	16	43	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0002	691	17	0	8	9	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0003	693	6	6	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0004	693	2	2	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0005	693	2	2	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0006	693	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0007	693	1	0	1	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0008	693	1	0	1	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0009	693	1	0	0	0	0	1	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0010	693	1	0	1	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0011	691	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	t0012	693	1	0	1	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NDC1_chr1_53760478_53843296	1/1	t0001	2528	120	36	16	41	5	20	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0002	2529	57	26	8	14	1	8	copy fasta	NDC1	chr1	53760478	53843296