JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDC1_chr1_53760478_53843296	0/0	t0003	2530	6	6	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0004	2529	3	2	1	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0005	2527	2	2	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0006	2529	2	2	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0007	2529	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0008	2529	1	0	1	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0009	2529	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0010	2528	1	0	0	1	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0011	2528	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	t0012	2528	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC80_chr18_2566557_2621635	1/1	t0001	198	398	88	70	176	16	46	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	t0002	198	2	2	0	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	t0003	198	1	1	0	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	t0004	198	1	1	0	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDE1_chr16_15645245_15731353	0/0	t0001	2196	109	27	23	33	5	21	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/1	t0002	2196	92	11	21	44	6	9	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0003	2196	52	0	3	46	0	3	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0004	2206	19	18	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0005	2206	12	0	2	8	1	1	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0006	2196	11	7	0	4	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0007	2197	10	4	4	0	1	1	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0008	2196	10	9	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0009	2193	5	5	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0010	2196	5	0	4	0	1	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0011	2196	3	2	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0012	2196	3	0	3	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0013	2197	3	0	0	3	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0014	2196	3	0	0	3	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0015	2196	2	2	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0016	2196	2	0	0	1	0	1	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0017	2197	2	0	0	2	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0018	2196	2	0	0	2	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0019	2196	2	0	2	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0020	2196	2	0	0	2	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0021	2197	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0022	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0023	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0024	2207	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0025	2206	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0026	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0027	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0028	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0029	2193	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0030	2196	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0031	2196	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0032	2196	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0033	2196	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0034	2196	1	0	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0035	2196	1	0	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0036	2196	1	0	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353