JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDE1_chr16_15645245_15731353	0/0	t0037	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	t0038	2196	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDEL1_chr17_8430884_8473163	0/1	t0001	1315	172	21	28	91	8	23	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0002	1315	164	41	28	72	5	18	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0003	1315	25	23	2	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	1/0	t0004	1315	6	4	1	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0005	1315	5	0	4	0	1	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0006	1315	4	4	0	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0007	1315	2	2	0	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0008	1315	1	1	0	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0009	1315	1	0	1	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0010	1315	1	0	0	0	0	1	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	t0011	1315	1	0	0	1	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDFIP1_chr5_142103779_142159440	0/0	t0001	2908	94	4	14	67	3	6	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0002	2909	63	2	18	34	4	5	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0003	2910	52	25	8	13	2	4	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/1	t0004	2909	50	8	9	25	0	7	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0005	2909	42	2	4	23	3	10	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0006	2909	18	11	5	2	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	1/0	t0007	2909	17	5	9	0	2	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0008	2909	14	11	0	3	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0009	2909	5	5	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0010	2909	4	1	2	0	1	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0011	2909	2	0	2	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0012	2909	2	2	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0013	2910	2	2	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0014	2909	2	2	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0015	2909	2	0	0	2	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0016	2908	1	0	1	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0017	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0018	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0019	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0020	2909	1	0	0	0	0	1	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0021	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0022	2956	1	0	1	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0023	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0024	2925	1	0	1	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0025	2909	1	0	0	0	0	1	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0026	2923	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0027	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0028	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0029	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0030	2910	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0031	2908	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0032	2910	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0033	2898	1	0	0	0	1	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0034	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0035	2909	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0036	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	t0037	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440