JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDFIP1_chr5_142103779_142159440	0/0	t0038	2909	1	0	0	1	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP2_chr13_79476155_79561077	1/0	t0001	3614	99	22	23	37	6	10	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0002	3614	86	5	12	50	4	15	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0003	3614	37	19	8	1	3	6	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/1	t0004	3614	18	13	3	0	1	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0005	3614	14	13	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0006	3616	9	0	0	6	0	3	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0007	3614	4	3	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0008	3614	3	3	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0009	3614	2	1	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0010	3614	2	2	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0011	3614	2	0	0	0	2	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0012	3614	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0013	3614	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0014	3614	1	0	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0015	3614	1	1	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0016	3616	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0017	3614	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0018	3614	1	1	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0019	3614	1	1	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0020	3614	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	t0021	3614	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDNF_chr4_121030613_121077535	0/1	t0001	1195	211	21	48	101	12	28	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	1/0	t0002	1195	87	46	11	16	5	8	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0003	1195	20	0	0	19	0	1	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0004	1195	13	10	2	0	0	1	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0005	1195	7	6	1	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0006	1195	6	1	2	0	1	2	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0007	1195	3	2	1	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0008	1195	2	0	0	2	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0009	1195	1	1	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0010	1195	1	0	0	1	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0011	1195	1	0	1	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0012	1195	1	1	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	t0013	1195	1	0	0	1	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDN_chr15_23680400_23692305	1/1	t0001	941	426	93	70	195	18	48	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0002	941	9	0	6	1	0	2	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0003	941	9	0	0	9	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0004	937	3	0	0	3	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0005	941	1	0	0	1	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0006	941	1	1	0	0	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	t0007	941	1	0	0	1	0	0	copy fasta	NDN	chr15	23680400	23692305
NDOR1_chr9_137200700_137224361	0/1	t0001	3024	179	41	41	77	7	12	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0002	3024	27	1	2	19	0	5	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0003	3024	23	6	2	4	1	10	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0004	3024	22	0	0	21	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0005	2973	11	0	7	3	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0006	3024	10	0	5	0	2	3	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0007	3024	9	9	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0008	2970	9	2	3	1	1	2	copy fasta	NDOR1	chr9	137200700	137224361