JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDOR1_chr9_137200700_137224361	0/0	t0009	3024	7	0	5	0	1	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0010	3024	7	7	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0011	3024	6	0	1	5	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0012	2973	6	0	0	6	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0013	3024	6	0	0	6	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0014	3024	6	1	2	0	1	2	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0015	3024	6	0	0	6	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0016	2970	4	4	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0017	3024	3	0	3	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0018	3024	3	3	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0019	3024	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	1/0	t0020	3024	2	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0021	3024	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0022	2970	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0023	2989	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0024	3024	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0025	3024	2	0	2	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0026	3024	2	0	0	0	2	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0027	3024	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0028	3024	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0029	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0030	3177	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0031	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0032	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0033	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0034	3024	1	0	0	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0035	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0036	3024	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0037	2782	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0038	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0039	3024	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0040	3024	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0041	3024	1	0	0	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0042	3024	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0043	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0044	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0045	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0046	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0047	3024	1	0	0	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0048	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0049	3024	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0050	3024	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0051	2973	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	t0052	3024	1	0	0	0	1	0	copy fasta	NDOR1	chr9	137200700	137224361
NDP_chrX_43943776_43978390	1/1	t0001	1318	301	63	62	128	12	34	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0002	1319	8	6	2	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0003	1318	6	6	0	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0004	1318	5	0	0	5	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0005	1318	3	3	0	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0006	1318	3	0	0	3	0	0	copy fasta	NDP	chrX	43943776	43978390