JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDP_chrX_43943776_43978390	0/0	t0007	1318	2	1	0	0	1	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0008	1318	1	0	0	1	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0009	1318	1	1	0	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0010	1318	1	0	1	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	t0011	1318	1	0	0	1	0	0	copy fasta	NDP	chrX	43943776	43978390
NDRG1_chr8_133232175_133302252	0/0	t0001	1841	167	24	22	93	5	23	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	1/0	t0002	1841	74	8	18	36	2	9	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0003	1841	65	13	24	13	8	7	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0004	1841	19	18	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0005	1841	9	7	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0006	1841	7	7	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0007	1841	6	6	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0008	1841	4	3	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0009	1841	3	3	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/1	t0010	1841	3	0	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0011	1841	2	2	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0012	1841	2	0	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0013	1841	2	0	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0014	1841	2	2	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0015	1841	2	2	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0016	1841	2	2	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0017	1841	1	0	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0018	1841	1	0	0	0	1	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0019	1841	1	0	0	1	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0020	1841	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0021	1841	1	0	0	0	0	1	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0022	1841	1	0	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0023	1841	1	0	0	1	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0024	1841	1	0	0	1	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	t0025	1841	1	0	0	1	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG2_chr14_21011772_21030061	1/0	t0001	1863	126	28	37	30	9	21	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/1	t0002	1863	88	11	16	51	3	6	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0003	1863	70	22	11	30	2	5	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0004	1863	56	11	1	39	0	5	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0005	1863	32	0	0	32	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0006	1863	31	4	7	12	4	4	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0007	1863	16	5	3	8	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0008	1863	11	0	0	11	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0009	1863	10	3	5	2	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0010	1863	8	0	0	7	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0011	1863	6	0	0	6	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0012	1863	5	4	1	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0013	1863	2	2	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0014	1863	2	2	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0015	1863	2	2	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0016	1863	2	2	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0017	1863	2	0	1	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0018	1863	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0019	1863	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0020	1863	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061