JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDRG2_chr14_21011772_21030061	0/0	t0021	1863	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0022	1863	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0023	1863	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0024	1863	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0025	1863	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0026	1863	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0027	1863	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	t0028	1863	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG3_chr20_36646771_36751090	0/1	t0001	1838	164	33	45	56	4	25	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	1/0	t0002	1844	46	2	7	34	0	2	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0003	1841	15	3	4	1	1	6	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0004	1833	13	8	3	1	0	1	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0005	1847	10	1	1	8	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0006	1838	6	0	2	1	1	2	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0007	1842	5	3	1	0	1	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0008	1838	5	5	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0009	1839	5	4	0	0	1	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0010	1833	5	4	1	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0011	1842	2	2	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0012	1844	2	1	1	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0013	1838	2	2	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0014	1833	2	2	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0015	1859	1	0	0	1	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0016	1856	1	0	0	0	0	1	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0017	1848	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0018	1845	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0019	1841	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0020	1841	1	0	0	0	0	1	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0021	1842	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0022	1841	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0023	1838	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0024	1838	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0025	1838	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0026	1838	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0027	1841	1	0	1	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0028	1831	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0029	1834	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	t0030	1834	1	1	0	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG4_chr16_58495143_58518619	0/0	t0001	2156	76	21	7	47	0	1	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0002	2160	61	2	8	41	4	6	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0003	2162	53	8	12	28	1	4	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0004	2152	37	5	18	2	4	8	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0005	2160	32	1	0	24	0	7	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0006	2158	19	5	0	10	2	2	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0007	2154	16	10	1	5	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0008	2146	8	0	3	0	1	4	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0009	2144	7	0	3	0	4	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0010	2154	6	0	4	0	2	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0011	2154	6	6	0	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	t0012	2162	6	0	0	6	0	0	copy fasta	NDRG4	chr16	58495143	58518619