JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDRG4_chr16_58495143_58518619	0/0	t0063	2160	1	0	0	1	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDST1_chr5_150503131_150563211	1/0	t0001	5363	66	5	15	40	2	3	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/1	t0002	5365	65	10	11	36	2	5	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0003	5364	44	2	16	11	3	12	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0004	5363	23	1	0	21	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0005	5363	22	0	0	21	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0006	5367	14	1	6	3	1	3	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0007	5363	12	12	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0008	5365	12	8	0	0	0	4	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0009	5365	8	8	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0010	5364	7	0	0	6	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0011	5363	6	6	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0012	5364	4	0	0	4	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0013	5363	4	0	0	4	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0014	5366	4	0	4	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0015	5363	3	0	2	0	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0016	5365	3	3	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0017	5365	3	3	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0018	5366	3	0	2	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0019	5367	3	3	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0020	5363	3	0	0	0	0	3	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0021	5363	3	0	0	3	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0022	5363	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0023	5365	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0024	5363	2	1	1	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0025	5363	2	2	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0026	5363	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0027	5363	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0028	5364	2	2	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0029	5365	2	0	1	0	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0030	5364	2	0	2	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0031	5365	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0032	5367	2	1	1	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0033	5369	2	2	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0034	5364	2	1	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0035	5366	2	0	0	1	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0036	5369	2	1	1	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0037	5365	2	0	0	2	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0038	5363	2	0	0	0	0	2	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0039	5365	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0040	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0041	5373	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0042	5363	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0043	5363	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0044	5363	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0045	5363	1	0	0	0	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0046	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0047	5364	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0048	5364	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0049	5364	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211