Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL13A_chrX_100964708_100995831	0/1	t0001	360	234	57	47	100	7	22	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	1/0	t0002	360	45	19	10	6	2	7	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	t0003	361	1	0	0	1	0	0	copy fasta	ARL13A	chrX	100964708	100995831
ARL13B_chr3_93975155_94060678	1/1	t0001	2685	238	59	54	78	9	36	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0002	2685	6	5	1	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0003	2685	5	0	0	5	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0004	2685	3	3	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0005	2685	2	2	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0006	2685	2	1	1	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0007	2685	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0008	2685	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0009	2685	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0010	2685	1	0	0	0	0	1	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0011	2685	1	1	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0012	2685	1	0	0	0	0	1	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0013	2685	1	1	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	t0014	2685	1	0	0	0	1	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL14EPL_chr5_116027472_116064489	0/1	t0001	586	195	35	49	71	13	26	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	1/0	t0002	586	185	23	29	112	5	15	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0003	586	54	11	2	41	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0004	586	15	12	0	0	0	3	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0005	586	6	5	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0006	586	2	2	0	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0007	586	1	0	0	1	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0008	586	1	0	0	1	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0009	586	1	1	0	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0010	586	1	0	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	t0011	586	1	1	0	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EP_chr11_30318104_30343223	0/0	t0001	1594	119	1	11	92	2	13	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0002	1593	102	35	15	45	1	6	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	1/0	t0003	1591	84	16	26	24	4	13	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0004	1594	46	33	7	0	0	6	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/1	t0005	1593	22	3	7	5	2	4	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0006	1593	14	1	6	7	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0007	1593	4	4	0	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0008	1594	1	0	1	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0009	1594	1	0	0	1	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0010	1593	1	0	0	1	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0011	1593	1	0	0	1	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0012	1591	1	0	0	0	0	1	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0013	1591	1	0	0	0	0	1	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0014	1594	1	0	0	0	1	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0015	1591	1	1	0	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	t0016	1593	1	0	1	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14_chr3_160672160_160683448	1/1	t0001	711	237	17	48	131	12	27	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0002	711	141	40	31	54	4	12	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0003	711	18	18	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0004	710	13	8	1	4	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0005	711	12	10	2	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0006	711	6	0	0	0	0	6	copy fasta	ARL14	chr3	160672160	160683448