JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDST1_chr5_150503131_150563211	0/0	t0050	5363	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0051	5363	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0052	5365	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0053	5366	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0054	5364	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0055	5365	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0056	5364	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0057	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0058	5368	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0059	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0060	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0061	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0062	5367	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0063	5369	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0064	5369	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0065	5369	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0066	5370	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0067	5369	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0068	5368	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0069	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0070	5365	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0071	5369	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0072	5365	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0073	5363	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0074	5367	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0075	5367	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0076	5365	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0077	5364	1	0	1	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0078	5363	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0079	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0080	5365	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0081	5364	1	0	1	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0082	5365	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0083	5365	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0084	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0085	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0086	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0087	5364	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0088	5363	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0089	5364	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	t0090	5368	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST2_chr10_73796916_73816598	0/1	t0001	1107	111	9	14	71	1	15	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	1/0	t0002	1107	101	37	14	45	0	4	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0003	1105	74	18	17	20	7	12	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0004	1107	55	10	6	30	1	8	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0005	1107	12	1	0	11	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0006	1107	10	10	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0007	1107	3	0	0	3	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0008	1107	2	0	1	0	1	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0009	1107	2	0	0	2	0	0	copy fasta	NDST2	chr10	73796916	73816598