JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDST2_chr10_73796916_73816598	0/0	t0010	1107	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0011	1107	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0012	1105	1	0	0	0	0	1	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0013	1107	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0014	1107	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	t0015	1107	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST3_chr4_118029486_118263634	1/1	t0001	3185	155	39	22	80	2	10	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0002	3185	29	4	13	7	0	5	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0003	3184	11	8	2	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0004	3185	3	3	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0005	3185	2	1	1	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0006	3185	1	0	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0007	3185	1	0	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0008	3226	1	0	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0009	3185	1	0	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0010	3185	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0011	3185	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0012	3185	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0013	3185	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0014	3185	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0015	3185	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0016	3185	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0017	3185	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0018	3185	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0019	3184	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0020	3184	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	t0021	3184	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST4_chr4_114822763_115118620	1/1	t0001	477	170	68	26	50	8	16	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	t0002	477	8	8	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	t0003	478	8	3	2	0	1	2	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	t0004	477	2	2	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	t0005	477	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	t0006	477	1	0	0	0	1	0	copy fasta	NDST4	chr4	114822763	115118620
NDUFA10_chr2_239952372_240030342	1/0	t0001	3788	93	15	19	40	3	15	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/1	t0002	3788	84	5	23	42	5	8	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0003	3771	39	3	6	22	4	4	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0004	3788	20	0	1	18	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0005	3788	18	3	2	9	2	2	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0006	3788	17	17	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0007	3788	16	0	4	12	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0008	3788	12	7	3	0	1	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0009	3788	10	0	0	10	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0010	3771	9	0	0	6	0	3	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0011	3788	8	0	8	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0012	3788	6	3	2	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0013	3788	6	6	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0014	3788	6	4	2	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0015	3716	5	5	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0016	3788	5	5	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0017	3788	3	3	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342