JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA10_chr2_239952372_240030342	0/0	t0018	3788	3	2	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0019	3788	3	0	0	3	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0020	3788	3	3	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0021	3788	2	0	0	2	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0022	3716	2	2	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0023	3788	2	1	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0024	3788	2	0	0	0	0	2	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0025	3788	2	2	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0026	3788	2	1	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0027	3771	2	0	2	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0028	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0029	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0030	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0031	3788	1	0	0	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0032	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0033	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0034	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0035	3788	1	0	0	0	1	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0036	3716	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0037	3716	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0038	3716	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0039	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0040	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0041	3825	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0042	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0043	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0044	3788	1	0	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0045	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0046	3788	1	0	0	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0047	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0048	3716	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0049	3788	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0050	3788	1	0	0	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0051	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0052	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0053	3788	1	0	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0054	3788	1	0	0	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0055	3771	1	0	0	0	0	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0056	3699	1	0	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0057	3788	1	0	1	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0058	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	t0059	3788	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA11_chr19_5889675_5908790	1/1	t0001	150	362	93	72	138	12	45	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	t0002	150	1	0	0	0	0	1	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	t0003	150	1	1	0	0	0	0	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA12_chr12_94966333_95008697	1/1	t0001	125	440	89	78	207	18	46	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA12_chr12_94966333_95008697	0/0	t0002	125	1	0	0	1	0	0	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA12_chr12_94966333_95008697	0/0	t0003	125	1	1	0	0	0	0	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA13_chr19_19511225_19533198	1/1	t0001	87	380	96	64	152	18	48	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA1_chrX_119866832_119881662	1/1	t0001	209	299	76	48	135	11	27	copy fasta	NDUFA1	chrX	119866832	119881662