JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA1_chrX_119866832_119881662	0/0	t0002	208	1	0	0	1	0	0	copy fasta	NDUFA1	chrX	119866832	119881662
NDUFA2_chr5_140640285_140652630	1/1	t0001	350	402	94	56	190	16	44	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	t0002	350	2	2	0	0	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	t0003	350	1	1	0	0	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	t0004	350	1	1	0	0	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA3_chr19_54097855_54112568	0/1	t0001	691	411	74	81	200	16	39	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0002	691	13	13	0	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0003	691	8	8	0	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0004	691	1	0	1	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0005	691	1	0	0	0	0	1	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0006	691	1	1	0	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0007	691	1	0	0	0	0	1	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0008	691	1	1	0	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0009	691	1	1	0	0	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	t0010	691	1	0	0	0	0	1	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA4L2_chr12_57229903_57242104	1/1	t0001	680	387	99	66	162	16	42	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	t0002	680	12	0	0	11	0	1	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	t0003	680	1	0	0	1	0	0	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	t0004	680	1	1	0	0	0	0	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	t0005	680	1	0	0	0	0	1	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4_chr7_10926943_10945153	0/0	t0001	1790	162	25	35	77	6	19	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0002	1790	113	16	21	65	5	6	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0003	1791	40	7	7	26	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/1	t0004	1790	39	10	10	10	1	7	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0005	1790	33	4	0	29	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0006	1790	8	6	2	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0007	1790	7	0	0	7	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0008	1790	5	5	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0009	1790	4	3	1	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0010	1792	4	0	3	0	0	1	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0011	1790	4	4	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0012	1791	3	3	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0013	1791	3	1	2	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0014	1791	3	3	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	1/0	t0015	1790	2	0	1	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0016	1790	2	0	2	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0017	1791	2	0	0	1	0	1	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0018	1790	2	2	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0019	1790	2	0	1	0	0	1	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0020	1790	2	2	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0021	1790	1	0	0	0	0	1	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0022	1790	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0023	1790	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0024	1790	1	0	0	1	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0025	1790	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0026	1790	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0027	1790	1	0	1	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0028	1791	1	0	0	1	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0029	1791	1	0	0	1	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	t0030	1790	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153