JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA5_chr7_123531997_123562818	0/1	t0001	5148	69	12	17	31	1	7	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	1/0	t0002	5146	60	7	6	36	1	9	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0003	5150	36	9	6	16	2	3	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0004	5152	19	7	2	7	1	2	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0005	5140	16	2	2	8	0	4	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0006	5150	15	3	6	5	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0007	5154	13	1	4	8	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0008	5144	12	3	0	7	2	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0009	5156	10	0	1	8	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0010	5152	9	2	3	3	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0011	5158	8	1	1	5	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0012	5138	6	0	3	0	2	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0013	5146	5	0	0	2	0	3	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0014	5148	5	3	1	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0015	5160	5	0	0	5	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0016	5148	5	5	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0017	5154	5	0	1	4	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0018	5152	4	0	0	3	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0019	5154	4	0	0	2	0	2	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0020	5156	4	0	1	3	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0021	5142	4	0	1	3	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0022	5144	4	2	0	1	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0023	5146	4	3	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0024	5148	4	0	0	4	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0025	5144	4	1	3	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0026	5142	3	1	0	1	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0027	5150	3	2	0	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0028	5150	3	0	1	1	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0029	5152	3	0	0	3	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0030	5150	2	0	0	1	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0031	5156	2	0	0	2	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0032	5158	2	0	0	2	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0033	5162	2	0	0	2	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0034	5128	2	2	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0035	5136	2	0	0	0	2	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0036	5160	2	2	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0037	5146	2	0	1	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0038	5146	2	0	1	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0039	5146	2	0	1	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0040	5148	2	0	0	1	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0041	5156	2	2	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0042	5162	2	2	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0043	5142	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0044	5144	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0045	5146	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0046	5148	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0047	5148	1	0	0	0	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0048	5144	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0049	5148	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0050	5139	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818