JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA5_chr7_123531997_123562818	0/0	t0051	5154	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0052	5158	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0053	5158	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0054	5158	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0055	5166	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0056	5132	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0057	5150	1	0	1	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0058	5134	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0059	5146	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0060	5136	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0061	5157	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0062	5156	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0063	5158	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0064	5142	1	0	0	0	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0065	5158	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0066	5160	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0067	5144	1	0	1	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0068	5146	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0069	5146	1	0	0	0	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0070	5146	1	0	0	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0071	5162	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0072	5165	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0073	5148	1	0	0	0	1	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0074	5148	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0075	5148	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0076	5156	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0077	5152	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0078	5152	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0079	5154	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0080	5158	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0081	5158	1	0	1	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0082	5158	1	0	0	0	0	1	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0083	5166	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0084	5142	1	0	1	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0085	5156	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0086	5154	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0087	5162	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	t0088	5160	1	1	0	0	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA6_chr22_42080526_42095772	0/1	t0001	686	260	87	46	94	11	21	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0002	686	128	2	32	69	4	21	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0003	686	4	0	0	4	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0004	686	3	3	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0005	686	2	0	2	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0006	686	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0007	686	1	0	0	1	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0008	686	1	0	0	0	1	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0009	686	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0010	686	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	t0011	686	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA7_chr19_8306284_8326375	1/1	t0001	239	399	94	79	169	16	39	copy fasta	NDUFA7	chr19	8306284	8326375