JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA7_chr19_8306284_8326375	0/0	t0002	18	1	0	0	1	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	t0003	239	1	0	1	0	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	t0004	239	1	0	0	0	0	1	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA8_chr9_122139058_122164779	1/1	t0001	286	318	56	48	159	12	41	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	t0002	286	98	35	23	35	0	5	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	t0003	286	2	1	1	0	0	0	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	t0004	286	2	0	0	2	0	0	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA9_chr12_4644114_4699317	0/0	t0001	7224	114	15	23	61	2	13	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0002	7225	86	13	22	41	5	5	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0003	7224	23	0	6	16	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/1	t0004	7216	19	5	7	1	1	4	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0005	7223	18	11	3	1	2	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0006	7224	8	8	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0007	7223	6	6	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0008	7225	5	0	0	5	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0009	7225	4	0	2	0	2	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	1/0	t0010	7223	3	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0011	7224	3	3	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0012	7225	3	0	0	0	0	3	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0013	7224	3	0	1	0	0	2	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0014	7223	2	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0015	7217	2	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0016	7226	2	0	0	0	0	2	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0017	7225	2	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0018	7223	2	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0019	7223	2	0	2	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0020	7224	2	0	0	2	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0021	7223	2	1	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0022	7224	2	0	0	2	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0023	7216	2	1	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0024	7217	2	0	0	0	0	2	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0025	7224	2	0	0	1	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0026	7224	2	2	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0027	7225	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0028	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0029	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0030	7225	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0031	7225	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0032	7225	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0033	7225	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0034	7225	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0035	7225	1	0	0	0	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0036	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0037	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0038	7223	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0039	7223	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0040	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0041	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0042	7224	1	0	0	0	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0043	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317