JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFA9_chr12_4644114_4699317	0/0	t0044	7223	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0045	7224	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0046	7224	1	0	0	0	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0047	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0048	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0049	9991	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0050	9991	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0051	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0052	7224	1	0	0	0	0	1	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0053	7216	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0054	7217	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0055	7216	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0056	7216	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0057	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0058	7223	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0059	7215	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0060	7220	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0061	7220	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0062	7220	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0063	7220	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0064	7224	1	0	0	1	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0065	7224	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0066	7224	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	t0067	7216	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFAB1_chr16_23576014_23601316	1/1	t0001	195	360	78	62	162	16	40	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAF1_chr15_41382353_41407496	1/1	t0001	526	325	76	58	140	11	38	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0002	526	17	8	4	0	2	3	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0003	526	7	0	4	0	0	3	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0004	526	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0005	526	1	0	0	1	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0006	526	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0007	526	1	0	0	1	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	t0008	526	1	0	0	0	1	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF2_chr5_60940205_61158026	1/1	t0001	123	266	86	52	78	14	34	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF3_chr3_49017121_49028495	1/1	t0001	348	263	86	54	69	14	38	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	t0002	349	6	0	0	6	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	t0003	348	3	0	0	3	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	t0004	348	2	0	0	2	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF4_chr6_96884315_96902891	0/0	t0001	1880	130	22	32	61	3	12	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0002	1880	124	25	21	66	2	10	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0003	1880	107	5	11	73	4	14	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	1/0	t0004	1880	23	5	8	0	2	7	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0005	1880	23	17	1	5	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0006	1880	7	2	3	0	0	2	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0007	1880	5	5	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0008	1880	3	3	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0009	1880	2	0	2	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0010	1880	2	2	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0011	1880	2	2	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/1	t0012	1880	2	0	1	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891