JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFAF4_chr6_96884315_96902891	0/0	t0013	1880	1	0	1	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0014	1880	1	0	0	0	1	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0015	1880	1	0	0	0	0	1	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0016	1880	1	0	0	1	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0017	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0018	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0019	1880	1	0	0	0	0	1	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0020	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0021	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0022	1880	1	0	0	0	0	1	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0023	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	t0024	1880	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF5_chr20_13780028_13826580	0/0	t0001	4412	105	14	10	66	1	14	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0002	4390	69	9	17	31	3	9	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	1/0	t0003	4412	65	1	16	36	2	9	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0004	4398	43	1	9	22	3	8	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/1	t0005	4412	29	10	5	10	0	3	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0006	4390	14	0	0	14	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0007	4413	10	9	1	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0008	4413	9	7	1	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0009	4411	7	3	2	1	1	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0010	4412	6	6	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0011	4411	6	6	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0012	4412	5	3	0	0	2	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0013	4412	4	0	0	3	0	1	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0014	4412	3	3	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0015	4412	3	3	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0016	4413	3	3	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0017	4390	3	0	0	3	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0018	4412	2	0	0	0	0	2	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0019	4412	2	0	0	2	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0020	4390	2	0	2	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0021	4390	2	2	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0022	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0023	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0024	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0025	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0026	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0027	4412	1	0	0	0	1	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0028	4412	1	0	0	0	1	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0029	4412	1	0	1	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0030	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0031	4412	1	0	0	0	0	1	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0032	4412	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0033	4412	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0034	4413	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0035	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0036	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0037	4412	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0038	4398	1	0	0	0	1	0	copy fasta	NDUFAF5	chr20	13780028	13826580