JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFAF5_chr20_13780028_13826580	0/0	t0039	4398	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0040	4411	1	0	1	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0041	4390	1	0	0	0	1	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0042	4390	1	0	0	0	0	1	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0043	4390	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0044	4411	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	t0045	4390	1	0	1	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF6_chr8_95019989_95063710	0/1	t0001	794	301	64	62	134	11	29	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	1/0	t0002	794	10	5	3	0	1	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0003	794	9	9	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0004	794	8	7	1	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0005	794	3	3	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0006	794	2	2	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0007	794	1	1	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0008	794	1	1	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	t0009	794	1	0	0	0	0	1	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF7_chr2_37226658_37254160	0/1	t0001	860	155	15	36	73	11	19	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	1/0	t0002	859	135	38	19	65	2	10	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0003	859	85	1	12	69	0	3	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0004	860	32	26	4	0	2	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0005	859	9	5	1	0	1	2	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0006	859	6	5	1	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0007	858	4	1	0	0	2	1	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0008	859	2	1	1	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0009	859	2	2	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0010	860	1	0	0	0	0	1	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	t0011	860	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF8_chr17_81234318_81246310	1/1	t0001	341	237	78	56	74	8	19	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0002	341	34	2	5	22	1	4	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0003	341	10	0	2	8	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0004	341	3	2	1	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0005	341	2	0	0	0	1	1	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0006	336	1	1	0	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	t0007	341	1	1	0	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFB10_chr16_1954538_1966975	1/1	t0001	157	421	82	78	200	14	45	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0002	157	11	11	0	0	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0003	157	5	4	0	0	0	1	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0004	157	4	0	0	3	0	1	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0005	157	2	0	2	0	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0006	157	1	0	0	0	0	1	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0007	157	1	0	0	1	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	t0008	157	1	1	0	0	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB11_chrX_47137216_47149702	1/1	t0001	125	272	73	48	115	11	23	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	t0002	124	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	t0003	126	1	0	0	0	0	1	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB1_chr14_92111123_92126706	0/1	t0001	141	266	47	24	168	4	22	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB1_chr14_92111123_92126706	1/0	t0002	141	175	44	56	34	14	26	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB1_chr14_92111123_92126706	0/0	t0003	141	1	1	0	0	0	0	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB2_chr7_140691708_140711643	1/1	t0001	148	295	90	59	90	14	40	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB2_chr7_140691708_140711643	0/0	t0002	148	11	0	1	8	0	2	copy fasta	NDUFB2	chr7	140691708	140711643