Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL14_chr3_160672160_160683448	0/0	t0007	711	3	1	1	0	0	1	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0008	711	2	1	1	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0009	711	1	1	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	t0010	711	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL15_chr5_53878942_54315573	0/1	t0001	2714	114	30	32	25	10	16	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	1/0	t0002	2714	48	21	4	19	0	3	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0003	2713	10	0	5	1	0	4	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0004	2714	5	5	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0005	2716	5	2	2	0	0	1	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0006	2715	5	2	1	0	2	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0007	2716	5	4	1	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0008	2715	3	2	1	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0009	2714	2	2	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0010	2714	2	0	1	0	0	1	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0011	2713	1	1	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0012	2713	1	1	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0013	2714	1	0	0	1	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0014	2715	1	0	1	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0015	2715	1	1	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0016	2714	1	0	0	0	0	1	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	t0017	2714	1	1	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL16_chr17_81676187_81688797	1/0	t0001	566	290	64	64	117	10	34	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/1	t0002	566	104	14	11	64	6	8	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	t0003	566	32	0	4	25	0	3	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	t0004	566	15	15	0	0	0	0	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	t0005	566	2	1	1	0	0	0	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	t0006	566	1	0	0	0	0	1	copy fasta	ARL16	chr17	81676187	81688797
ARL17A_chr17_46547756_46584691	0/0	t0001	4709	26	1	5	14	2	4	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0002	4709	25	16	1	2	2	4	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0003	4709	22	0	4	15	2	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0004	4708	8	1	2	0	2	3	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0005	4704	7	1	3	0	2	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0006	4709	5	1	2	2	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0007	4709	4	4	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0008	4709	4	0	0	4	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0009	4709	3	3	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0010	4709	3	3	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0011	4709	3	2	1	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0012	4709	3	3	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0013	4709	3	0	0	3	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0014	4709	2	2	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0015	4709	2	2	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0016	4709	2	2	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0017	4708	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0018	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0019	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0020	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0021	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0022	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0023	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691