JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFB3_chr2_201067001_201090750	1/1	t0001	197	294	78	53	119	10	32	copy fasta	NDUFB3	chr2	201067001	201090750
NDUFB3_chr2_201067001_201090750	0/0	t0002	199	38	18	11	3	4	2	copy fasta	NDUFB3	chr2	201067001	201090750
NDUFB4_chr3_120591336_120607507	1/1	t0001	262	409	81	75	187	17	47	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB4_chr3_120591336_120607507	0/0	t0002	262	4	0	0	4	0	0	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB4_chr3_120591336_120607507	0/0	t0003	262	3	3	0	0	0	0	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB4_chr3_120591336_120607507	0/0	t0004	262	3	0	1	0	1	1	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB4_chr3_120591336_120607507	0/0	t0005	262	3	0	0	3	0	0	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB4_chr3_120591336_120607507	0/0	t0006	262	2	2	0	0	0	0	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB5_chr3_179599794_179632647	0/0	t0001	3645	38	1	10	24	0	3	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	1/1	t0002	3630	33	7	17	2	1	4	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0003	3623	27	3	6	17	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0004	3647	22	0	5	13	2	2	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0005	3649	11	2	2	5	0	2	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0006	3641	11	0	0	10	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0007	3631	11	0	0	11	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0008	3643	9	1	1	6	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0009	3623	9	0	0	0	3	6	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0010	3642	8	7	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0011	3651	6	1	1	4	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0012	3632	6	1	0	1	1	3	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0013	3623	6	0	0	6	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0014	3650	5	0	0	4	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0015	3648	5	0	1	4	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0016	3646	5	2	0	3	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0017	3643	5	4	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0018	3643	5	2	3	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0019	3631	5	5	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0020	3660	4	1	1	2	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0021	3656	4	1	0	3	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0022	3645	4	2	1	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0023	3642	4	0	0	4	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0024	3643	4	3	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0025	3627	4	4	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0026	3666	3	3	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0027	3654	3	3	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0028	3652	3	1	0	2	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0029	3642	3	0	3	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0030	3642	3	0	0	3	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0031	3641	3	3	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0032	3632	3	3	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0033	3621	3	2	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0034	3621	2	2	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0035	3658	2	0	0	2	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0036	3662	2	0	0	2	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0037	3658	2	0	0	1	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0038	3660	2	0	1	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0039	3655	2	0	1	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0040	3653	2	0	0	1	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0041	3653	2	2	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0042	3647	2	2	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647