JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NDUFB5_chr3_179599794_179632647	0/0	t0043	3645	2	2	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0044	3641	2	0	0	0	2	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0045	3632	2	2	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0046	3631	2	0	0	2	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0047	3622	2	0	0	2	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0048	3645	2	0	0	2	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0049	3645	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0050	3634	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0051	3624	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0052	3625	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0053	3664	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0054	3660	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0055	3658	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0056	3652	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0057	3641	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0058	3670	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0059	3670	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0060	3671	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0061	3669	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0062	3664	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0063	3665	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0064	3663	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0065	3661	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0066	3660	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0067	3664	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0068	3655	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0069	3657	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0070	3659	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0071	3659	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0072	3657	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0073	3657	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0074	3653	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0075	3654	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0076	3655	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0077	3655	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0078	3652	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0079	3649	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0080	3646	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0081	3647	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0082	3644	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0083	3647	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0084	3644	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0085	3646	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0086	3645	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0087	3642	1	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0088	3645	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0089	3642	1	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0090	3644	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0091	3644	1	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0092	3644	1	0	0	1	0	copy fasta	NDUFB5	chr3	179599794	179632647