JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFB5_chr3_179599794_179632647	0/0	t0093	3640	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0094	3641	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0095	3640	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0096	3639	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0097	3629	1	0	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0098	3630	1	0	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0099	3631	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0100	3634	1	0	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0101	3626	1	0	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0102	3671	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0103	3663	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0104	3664	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0105	3650	1	1	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0106	3648	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0107	3643	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0108	3633	1	0	0	1	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	t0109	3623	1	0	0	0	0	1	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB6_chr9_32548001_32578159	1/1	t0001	975	246	51	47	118	9	19	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0002	975	86	15	28	20	6	17	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0003	975	12	0	0	12	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0004	975	7	7	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0005	975	5	3	2	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0006	975	5	0	0	5	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0007	975	3	3	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0008	952	3	3	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0009	952	2	2	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0010	975	2	1	1	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0011	975	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0012	975	1	0	0	1	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0013	985	1	0	0	1	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0014	975	1	0	0	0	1	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0015	975	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0016	975	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	t0017	975	1	0	0	1	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB7_chr19_14561078_14577066	1/1	t0001	122	381	72	79	174	10	44	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	t0002	122	15	15	0	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	t0003	122	4	4	0	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	t0004	122	1	0	1	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	t0005	122	1	1	0	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB8_chr10_100518740_100534871	1/1	t0001	118	362	92	66	144	16	42	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB9_chr8_124534123_124554979	1/1	t0001	152	378	97	60	167	10	42	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	t0002	152	10	0	3	1	2	4	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	t0003	152	3	0	1	0	2	0	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	t0004	152	1	1	0	0	0	0	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFC1_chr4_139284931_139307477	1/1	t0001	466	330	76	67	140	14	31	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	t0002	466	33	6	10	10	2	5	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	t0003	466	11	10	1	0	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	t0004	466	1	0	0	1	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	t0005	466	1	0	0	1	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC2_chr11_78063297_78084862	0/0	t0001	1805	250	34	52	122	16	26	copy fasta	NDUFC2	chr11	78063297	78084862