JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFC2_chr11_78063297_78084862	1/0	t0002	1809	81	2	4	63	0	11	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0003	1806	48	29	9	3	1	6	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/1	t0004	1804	9	4	2	2	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0005	1810	7	5	0	2	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0006	1805	4	4	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0007	1805	3	3	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0008	1805	3	3	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0009	1808	2	2	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0010	1809	2	2	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0011	1805	2	0	2	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0012	1805	1	1	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0013	1805	1	0	1	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0014	1805	1	0	0	0	0	1	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0015	1809	1	1	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0016	1805	1	1	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0017	1805	1	0	0	1	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0018	1808	1	0	0	0	1	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0019	1809	1	0	0	1	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	t0020	1806	1	1	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFS1_chr2_206109817_206164444	0/0	t0001	9477	62	4	6	44	2	6	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0002	9477	34	1	4	22	3	4	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0003	9487	22	0	7	5	0	10	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	1/1	t0004	9477	21	6	2	4	1	6	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0005	9487	19	0	13	0	3	3	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0006	9488	10	4	0	6	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0007	9487	9	5	0	4	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0008	9465	8	0	3	5	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0009	9492	8	0	1	6	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0010	9487	8	0	0	8	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0011	9477	6	6	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0012	9487	6	0	1	5	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0013	9477	5	0	3	2	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0014	9487	5	4	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0015	9488	4	0	1	2	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0016	9487	4	4	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0017	9488	4	4	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0018	9473	3	0	0	3	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0019	9493	3	0	0	3	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0020	9487	3	0	3	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0021	9351	3	0	0	3	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0022	9487	3	0	2	0	1	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0023	9494	2	2	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0024	9477	2	0	0	2	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0025	9477	2	0	2	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0026	9477	2	0	2	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0027	9488	2	2	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0028	9487	2	0	0	1	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0029	9487	2	2	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0030	9488	2	0	1	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0031	9487	2	0	0	2	0	0	copy fasta	NDUFS1	chr2	206109817	206164444