JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFS1_chr2_206109817_206164444	0/0	t0032	9488	2	2	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0033	9488	2	0	2	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0034	9489	2	0	0	2	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0035	9487	2	0	2	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0036	9492	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0037	9489	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0038	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0039	9487	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0040	9477	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0041	9476	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0042	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0043	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0044	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0045	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0046	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0047	9477	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0048	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0049	9477	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0050	9477	1	0	0	0	1	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0051	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0052	9465	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0053	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0054	9477	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0055	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0056	9476	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0057	9477	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0058	9476	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0059	9477	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0060	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0061	9477	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0062	9492	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0063	9493	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0064	9489	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0065	9488	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0066	9488	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0067	9489	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0068	9491	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0069	9492	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0070	9493	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0071	9494	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0072	9494	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0073	9494	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0074	9495	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0075	9495	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0076	9494	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0077	9486	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0078	9491	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0079	9493	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0080	9487	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0081	9488	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444