JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFS1_chr2_206109817_206164444	0/0	t0082	9477	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0083	9477	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0084	9477	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0085	9487	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0086	9488	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0087	9486	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0088	9487	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0089	9487	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0090	9488	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0091	9488	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0092	9489	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0093	9488	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0094	9487	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	t0095	9487	1	0	0	0	1	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS2_chr1_161197367_161219395	1/0	t0001	222	93	40	19	11	9	13	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0002	224	83	4	13	54	1	11	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0003	224	81	27	11	35	2	6	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0004	228	80	8	15	48	3	6	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0005	230	50	0	2	46	1	1	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0006	226	24	8	7	5	2	2	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0007	234	7	0	0	6	0	1	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/1	t0008	232	6	0	1	4	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0009	226	4	0	0	2	0	2	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0010	222	3	0	0	0	0	3	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0011	222	3	3	0	0	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0012	240	2	2	0	0	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0013	212	1	0	0	0	0	1	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	t0014	236	1	0	0	1	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS3_chr11_47574074_47589562	1/1	t0001	100	418	86	82	188	16	44	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	t0002	100	4	0	0	4	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS4_chr5_53555639_53688338	1/1	t0001	142	225	58	31	102	6	26	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	t0002	142	146	30	43	55	6	12	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	t0003	142	4	0	0	4	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	t0004	142	2	2	0	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	t0005	142	1	0	0	1	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS5_chr1_39021350_39039615	1/1	t0001	175	434	98	67	202	18	47	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS5_chr1_39021350_39039615	0/0	t0002	175	4	0	3	0	0	1	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS6_chr5_1796407_1821048	1/1	t0001	144	440	93	74	206	18	47	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS6_chr5_1796407_1821048	0/0	t0002	144	3	0	2	0	0	1	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS6_chr5_1796407_1821048	0/0	t0003	144	1	1	0	0	0	0	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS7_chr19_1378907_1400584	1/1	t0001	117	376	58	69	186	14	47	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	t0002	117	25	19	3	0	2	1	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	t0003	120	15	14	0	1	0	0	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	t0004	117	1	0	0	1	0	0	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	t0005	117	1	1	0	0	0	0	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS8_chr11_68025681_68041644	1/1	t0001	105	301	52	62	129	14	42	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	t0002	105	75	25	9	35	2	4	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	t0003	105	21	6	3	12	0	0	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	t0004	105	11	11	0	0	0	0	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFV1_chr11_67601936_67617554	1/1	t0001	166	361	76	58	171	16	38	copy fasta	NDUFV1	chr11	67601936	67617554