JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFV1_chr11_67601936_67617554	0/0	t0002	166	16	16	0	0	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	t0003	166	7	0	0	7	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	t0004	166	2	0	2	0	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	t0005	166	1	0	0	0	0	1	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	t0006	166	1	0	0	0	0	1	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV2_chr18_9097699_9139341	1/1	t0001	108	365	90	71	152	16	34	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	t0002	108	2	1	1	0	0	0	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	t0003	108	1	1	0	0	0	0	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV3_chr21_42888309_42918299	0/0	t0001	4304	85	6	15	48	4	12	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/1	t0002	4300	31	24	4	0	1	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0003	4305	20	1	5	12	0	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0004	4299	16	1	0	14	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0005	4299	14	0	2	8	0	4	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0006	4304	14	0	2	10	0	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0007	4305	12	0	0	8	0	4	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0008	4305	11	0	2	9	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0009	4298	10	2	5	0	2	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0010	4306	10	1	1	6	0	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0011	4302	7	0	3	0	2	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0012	4298	7	0	3	0	2	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	1/0	t0013	4304	7	0	0	6	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0014	4298	4	3	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0015	4300	4	0	1	3	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0016	4300	4	4	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0017	4306	4	4	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0018	4304	3	2	0	0	1	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0019	4303	3	0	0	3	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0020	4300	3	0	0	3	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0021	4301	3	3	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0022	4302	3	2	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0023	4340	2	0	1	0	1	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0024	4299	2	2	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0025	4303	2	0	0	1	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0026	4304	2	0	2	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0027	4304	2	0	0	1	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0028	4299	2	0	0	0	0	2	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0029	4300	2	1	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0030	4303	2	2	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0031	4300	2	0	0	2	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0032	4297	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0033	4259	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0034	4303	1	0	0	0	1	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0035	4304	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0036	4298	1	0	0	0	1	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0037	4297	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0038	4298	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0039	4300	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0040	4299	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0041	4303	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0042	4300	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299