JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NDUFV3_chr21_42888309_42918299	0/0	t0043	4303	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0044	4267	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0045	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0046	4305	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0047	4306	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0048	4307	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0049	4306	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0050	4302	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0051	4341	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0052	4305	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0053	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0054	4304	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0055	4262	1	0	0	0	1	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0056	4304	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0057	4304	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0058	4299	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0059	4299	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0060	4300	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0061	4301	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0062	4305	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0063	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0064	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0065	4303	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0066	4304	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0067	4305	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0068	4305	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0069	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0070	4300	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0071	4306	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0072	4308	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0073	4301	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0074	4302	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0075	4300	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0076	4304	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0077	4304	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0078	4304	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0079	4263	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0080	4264	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0081	4305	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0082	4301	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0083	4302	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0084	4306	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0085	4307	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	t0086	4305	1	0	0	1	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NEBL_chr10_20774973_20902311	1/0	t0001	5881	87	6	23	46	5	6	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0002	5880	55	2	10	36	2	5	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0003	5880	32	0	1	28	0	3	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0004	5880	16	16	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0005	5880	15	7	1	7	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0006	5880	15	0	0	15	0	0	copy fasta	NEBL	chr10	20774973	20902311