JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEBL_chr10_20774973_20902311	0/0	t0007	5881	13	11	2	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0008	5881	10	10	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0009	5880	10	0	1	8	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0010	5880	9	1	6	0	1	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0011	5880	7	7	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0012	5881	6	0	3	0	0	3	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0013	5881	5	4	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0014	5880	5	1	3	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0015	5880	4	4	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0016	5880	4	0	3	0	1	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0017	5880	3	3	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0018	5880	3	3	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0019	5880	3	0	0	3	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0020	5880	2	0	0	2	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0021	5881	2	0	0	0	0	2	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0022	5881	2	0	0	0	0	2	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0023	5880	2	0	0	0	2	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0024	5880	2	0	0	2	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0025	5881	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0026	5881	1	0	0	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0027	5881	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0028	5881	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0029	5881	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0030	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0031	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0032	5881	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0033	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0034	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0035	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0036	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/1	t0037	5881	1	0	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0038	5880	1	0	0	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0039	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0040	5881	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0041	5881	1	0	0	0	1	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0042	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0043	5880	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0044	5880	1	0	0	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0045	5880	1	0	0	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0046	5880	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0047	5880	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0048	5880	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0049	5881	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	t0050	5880	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEB_chr2_151480339_151739476	1/1	t0001	614	180	51	18	79	8	22	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	t0002	612	7	7	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	t0003	614	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NECAB1_chr8_90786775_90964393	1/0	t0001	3994	52	4	11	23	4	9	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0002	3992	41	3	7	25	1	5	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0003	3999	12	0	1	11	0	0	copy fasta	NECAB1	chr8	90786775	90964393