JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NECAB1_chr8_90786775_90964393	0/0	t0004	4002	12	10	2	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0005	3999	8	1	0	7	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0006	4001	8	2	0	5	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0007	3990	8	0	3	3	2	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0008	3992	7	0	0	6	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0009	3991	6	6	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0010	3994	6	0	0	6	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0011	3994	6	1	1	4	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0012	3993	5	5	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0013	3996	5	0	2	2	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0014	4000	5	2	2	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0015	3988	5	1	1	2	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0016	4003	4	4	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0017	3989	3	3	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0018	3998	3	3	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0019	3994	3	3	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0020	3980	3	0	2	0	1	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0021	3996	3	2	1	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/1	t0022	3992	3	0	1	0	1	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0023	4004	3	2	1	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0024	3968	2	0	2	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0025	3992	2	1	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0026	3996	2	0	0	2	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0027	3991	2	0	0	2	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0028	4000	2	2	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0029	4004	2	2	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0030	3987	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0031	3992	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0032	3996	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0033	3997	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0034	3999	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0035	4002	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0036	4004	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0037	3990	1	0	0	0	1	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0038	3993	1	0	1	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0039	3991	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0040	3992	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0041	3993	1	0	1	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0042	3997	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0043	4002	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0044	3999	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0045	3992	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0046	3982	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0047	3988	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0048	3998	1	0	1	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0049	3993	1	0	0	0	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0050	3998	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0051	3996	1	0	0	1	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0052	3996	1	0	0	0	0	1	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	t0053	4001	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393