Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL17A_chr17_46547756_46584691	0/0	t0024	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0025	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0026	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0027	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0028	4709	1	1	0	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0029	4708	1	0	0	0	1	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0030	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0031	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0032	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0033	4709	1	0	1	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0034	4709	1	0	1	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0035	4704	1	0	1	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0036	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0037	4709	1	0	0	1	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0038	4709	1	0	0	0	0	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0039	4709	1	0	1	0	0	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	t0040	4708	1	0	0	0	1	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17B_chr17_46329902_46366766	0/0	t0001	4707	10	10	0	0	0	0	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0002	4703	8	3	2	2	0	1	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0003	4709	4	0	0	1	0	3	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0004	4703	1	0	0	1	0	0	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0005	4703	1	1	0	0	0	0	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0006	4707	1	1	0	0	0	0	copy fasta	ARL17B	chr17	46329902	46366766
ARL17B_chr17_46329902_46366766	0/0	t0007	4707	1	1	0	0	0	0	copy fasta	ARL17B	chr17	46329902	46366766
ARL1_chr12_101388116_101412772	1/0	t0001	2652	242	67	44	103	10	17	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0002	2652	96	2	13	67	2	12	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0003	2652	20	1	5	3	3	8	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/1	t0004	2652	16	7	2	0	0	6	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0005	2653	7	0	4	0	1	2	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0006	2653	2	2	0	0	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0007	2653	2	1	0	1	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0008	2652	2	0	1	0	1	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0009	2652	2	0	0	2	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0010	2652	2	2	0	0	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0011	2652	1	0	0	0	0	1	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0012	2653	1	0	0	0	1	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0013	2652	1	1	0	0	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0014	2652	1	1	0	0	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0015	2652	1	0	0	1	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0016	2652	1	0	1	0	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	t0017	2652	1	0	0	1	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL2BP_chr16_57240259_57258635	1/0	t0001	1478	336	69	61	158	16	31	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0002	1478	7	7	0	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0003	1478	7	7	0	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/1	t0004	1478	6	1	1	0	2	1	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0005	1478	4	0	0	4	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0006	1478	2	0	2	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0007	1478	2	2	0	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0008	1478	1	0	0	0	0	1	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0009	1478	1	0	0	1	0	0	copy fasta	ARL2BP	chr16	57240259	57258635