JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NECAB1_chr8_90786775_90964393	0/0	t0054	4000	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB2_chr16_83963244_84007776	1/0	t0001	836	99	5	19	55	6	13	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0002	836	39	0	16	12	4	7	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0003	838	33	22	4	6	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0004	838	21	21	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0005	836	20	7	4	8	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0006	838	18	0	7	11	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0007	836	14	1	2	9	1	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0008	838	12	3	0	8	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0009	836	10	1	2	5	0	2	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0010	838	8	7	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/1	t0011	838	7	0	0	0	0	6	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0012	838	4	4	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0013	838	4	0	2	1	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0014	838	3	0	2	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0015	838	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0016	836	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0017	836	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0018	838	3	0	2	0	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0019	839	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0020	838	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0021	838	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0022	838	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0023	838	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0024	838	2	0	0	0	0	2	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0025	836	2	0	2	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0026	836	2	0	0	0	0	2	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0027	837	2	0	2	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0028	837	2	0	1	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0029	837	2	0	0	2	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0030	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0031	839	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0032	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0033	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0034	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0035	838	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0036	838	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0037	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0038	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0039	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0040	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0041	836	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0042	836	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0043	836	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0044	836	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0045	836	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0046	837	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0047	838	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0048	836	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0049	836	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776