JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NECAB2_chr16_83963244_84007776	0/0	t0050	838	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0051	836	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0052	836	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0053	836	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0054	840	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0055	838	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0056	839	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	t0057	837	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB3_chr20_33652087_33679428	0/1	t0001	819	165	24	35	67	6	32	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0002	819	132	51	14	46	9	12	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0003	784	32	14	9	7	0	2	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0004	819	24	1	4	19	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0005	819	4	4	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0006	819	2	2	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0007	819	2	0	0	2	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0008	819	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	1/0	t0009	819	1	0	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0010	784	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0011	819	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0012	819	1	0	0	0	1	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0013	784	1	0	0	1	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	t0014	819	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAP1_chr12_8077274_8102881	0/1	t0001	1806	245	52	47	106	10	29	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0002	1806	156	13	24	95	4	20	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	1/0	t0003	1807	26	23	2	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0004	1806	5	5	0	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0005	1806	1	0	0	0	0	1	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0006	1806	1	0	0	1	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0007	1806	1	0	1	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	t0008	1807	1	1	0	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP2_chr1_16435724_16465078	0/1	t0001	1227	340	56	73	154	16	40	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0002	1227	19	17	2	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0003	1227	12	12	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0004	1227	7	1	3	0	1	2	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0005	1227	2	0	0	2	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	1/0	t0006	1227	2	0	0	0	1	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0007	1227	2	0	0	2	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0008	1227	1	1	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	t0009	1227	1	1	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECTIN1_chr11_119655992_119734200	0/1	t0001	4408	128	10	42	50	9	16	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	1/0	t0002	4403	94	13	13	52	4	11	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0003	4408	22	18	4	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0004	4408	12	12	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0005	4403	12	2	1	9	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0006	4408	9	0	0	9	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0007	4403	8	7	1	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0008	4408	4	3	1	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0009	4403	3	3	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0010	4408	3	3	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	t0011	4403	3	0	0	3	0	0	copy fasta	NECTIN1	chr11	119655992	119734200