JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NECTIN2_chr19_44841297_44894223	0/0	t0013	1074	1	0	0	0	1	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	t0014	1074	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	t0015	1074	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	t0016	1074	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN3_chr3_111066816_111142560	1/1	t0001	3548	89	10	16	48	7	6	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0002	3557	64	0	4	59	1	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0003	3533	45	20	4	17	2	2	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0004	3557	25	5	0	20	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0005	3532	10	9	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0006	3532	9	8	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0007	3557	8	0	2	6	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0008	3532	7	7	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0009	3557	7	7	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0010	3556	6	5	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0011	3557	6	4	2	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0012	3552	6	0	4	0	2	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0013	3552	4	4	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0014	3533	4	2	1	0	0	1	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0015	3533	3	2	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0016	3557	3	3	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0017	3548	2	2	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0018	3548	2	0	2	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0019	3548	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0020	3547	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0021	3532	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0022	3557	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0023	3557	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0024	3554	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0025	3548	1	0	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0026	3548	1	0	0	0	0	1	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0027	3548	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0028	3548	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0029	3533	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0030	3548	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0031	3548	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	t0032	3532	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN4_chr1_161065998_161094558	1/1	t0001	1926	330	61	56	158	15	38	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0002	1926	47	2	12	19	2	12	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0003	1926	8	0	1	7	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0004	1926	5	0	0	5	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0005	1926	4	4	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0006	1926	3	0	1	2	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0007	1926	2	0	0	2	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0008	1926	2	2	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0009	1926	1	0	1	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0010	1926	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0011	1926	1	1	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0012	1926	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0013	1926	1	0	1	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	t0014	1926	1	0	0	0	1	0	copy fasta	NECTIN4	chr1	161065998	161094558