JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NECTIN4_chr1_161065998_161094558	0/0	t0015	1926	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NEDD1_chr12_96902257_96958780	0/1	t0001	2033	133	28	22	67	0	15	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0002	2033	99	8	26	46	10	9	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	1/0	t0003	2033	56	1	11	39	0	4	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0004	2034	27	1	5	21	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0005	2033	22	5	5	5	4	3	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0006	2033	14	12	2	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0007	2034	8	8	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0008	2033	6	1	0	0	0	5	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0009	2033	6	6	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0010	2033	6	6	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0011	2034	5	5	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0012	2033	3	0	0	3	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0013	2033	2	2	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0014	2360	2	2	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0015	2033	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0016	2034	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0017	2034	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0018	2033	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0019	2034	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0020	2033	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0021	2033	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0022	2033	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0023	2033	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0024	2033	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	t0025	2033	1	0	1	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD4L_chr18_58039226_58406539	0/0	t0001	5707	16	8	2	4	1	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0002	5706	16	3	5	7	0	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0003	5708	9	3	2	4	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/1	t0004	5707	8	1	0	6	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0005	5693	5	4	1	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0006	5707	5	2	3	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0007	5706	4	4	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0008	5706	3	1	1	0	0	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0009	5658	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0010	5708	2	0	0	2	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0011	5719	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0012	5709	2	1	0	0	0	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0013	5708	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0014	5708	2	1	0	0	0	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0015	5696	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0016	5658	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0017	5707	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0018	5707	2	2	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0019	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0020	5706	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0021	5707	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0022	5708	1	0	1	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0023	5720	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0024	5707	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539