JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEDD4L_chr18_58039226_58406539	0/0	t0025	5706	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0026	5706	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0027	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0028	5709	1	0	0	0	0	1	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0029	5709	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0030	5718	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0031	5717	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0032	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0033	5707	1	0	0	0	1	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0034	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0035	5707	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0036	5707	1	0	1	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0037	5707	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0038	5706	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0039	5706	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0040	5705	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0041	5706	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0042	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0043	5706	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0044	5705	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0045	5705	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0046	5707	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0047	5659	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0048	5721	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	t0049	5707	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	1/0	t0050	5706	1	0	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4_chr15_55821922_55998612	0/0	t0001	3033	90	23	20	35	4	8	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0002	3028	69	8	9	37	6	9	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0003	3033	62	7	7	43	0	5	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/1	t0004	3033	40	12	19	3	2	3	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0005	3033	25	8	5	12	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0006	3033	17	0	8	0	3	6	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	1/0	t0007	3033	14	12	1	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0008	3033	7	0	4	3	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0009	3028	4	4	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0010	3033	2	2	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0011	3033	2	2	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0012	3033	2	2	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0013	3033	2	2	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0014	3033	1	1	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0015	3028	1	0	1	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0016	3028	1	0	0	0	1	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0017	3033	1	1	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0018	3033	1	0	0	1	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0019	3033	1	0	0	1	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0020	3033	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	t0021	3033	1	0	0	1	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD8_chr14_24211857_24237367	1/1	t0001	371	403	84	64	196	12	45	copy fasta	NEDD8	chr14	24211857	24237367
NEDD8_chr14_24211857_24237367	0/0	t0002	371	7	7	0	0	0	0	copy fasta	NEDD8	chr14	24211857	24237367
NEDD8_chr14_24211857_24237367	0/0	t0003	371	5	0	3	0	2	0	copy fasta	NEDD8	chr14	24211857	24237367