JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEDD8_chr14_24211857_24237367	0/0	t0004	371	2	0	1	0	0	1	copy fasta	NEDD8	chr14	24211857	24237367
NEDD8_chr14_24211857_24237367	0/0	t0005	371	1	1	0	0	0	0	copy fasta	NEDD8	chr14	24211857	24237367
NEDD9_chr6_11178298_11237668	0/1	t0001	2018	149	14	31	81	6	16	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0002	2019	94	24	14	46	2	8	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	1/0	t0003	2018	38	12	11	0	6	8	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0004	2018	26	1	2	22	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0005	2018	20	1	8	4	2	5	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0006	2018	11	0	5	2	2	2	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0007	2018	11	11	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0008	2018	8	8	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0009	2018	6	6	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0010	2018	4	0	4	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0011	2018	4	4	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0012	2018	3	3	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0013	2018	2	2	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0014	2018	2	1	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0015	2018	2	0	0	2	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0016	2018	2	2	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0017	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0018	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0019	2019	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0020	2019	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0021	2018	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0022	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0023	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0024	2018	1	0	0	0	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0025	2019	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0026	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0027	2018	1	0	0	0	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0028	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0029	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0030	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0031	2018	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	t0032	2019	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEFH_chr22_29475218_29496390	0/1	t0001	733	333	73	55	163	13	28	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	1/0	t0002	733	105	23	24	33	5	19	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	t0003	733	8	0	4	4	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	t0004	733	1	0	0	0	0	1	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	t0005	733	1	0	1	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFL_chr8_24945955_24961612	0/1	t0001	1953	198	15	45	99	10	28	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	1/0	t0002	1953	80	7	7	55	0	10	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0003	1953	28	27	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0004	1953	24	9	10	0	3	2	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0005	1953	22	5	5	7	0	5	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0006	1953	16	12	3	0	1	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0007	1953	8	3	0	5	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0008	1953	7	6	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0009	1953	5	5	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0010	1951	4	4	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0011	1953	4	3	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612