JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEFL_chr8_24945955_24961612	0/0	t0012	1953	3	0	0	3	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0013	1953	2	0	1	1	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0014	1953	1	1	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0015	1953	1	0	0	1	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0016	1953	1	0	0	0	0	1	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0017	1953	1	0	0	1	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0018	1953	1	0	0	1	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0019	1953	1	1	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	t0020	1953	1	0	0	1	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFM_chr8_24908761_24924093	1/1	t0001	521	302	80	62	114	14	30	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	t0002	521	125	16	12	77	4	16	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	t0003	521	1	0	0	1	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	t0004	521	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	t0005	521	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEGR1_chr1_71390943_72287539	0/0	t0001	11550	18	8	7	1	2	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0002	11551	8	6	2	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0003	11549	5	3	2	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0004	11549	4	4	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0005	11550	3	3	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0006	11547	3	3	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0007	11548	2	0	2	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0008	11551	2	2	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0009	11552	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0010	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0011	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0012	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0013	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0014	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0015	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0016	11550	1	0	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0017	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0018	11550	1	0	0	1	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0019	11548	1	0	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0020	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0021	11551	1	0	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0022	11551	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0023	11551	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0024	11551	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0025	11548	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0026	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	t0027	11550	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEIL1_chr15_75342039_75362115	0/1	t0001	2539	170	27	35	79	12	16	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	1/0	t0002	2539	113	20	17	69	2	4	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0003	2539	33	23	4	5	0	1	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0004	2539	21	0	1	18	0	2	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0005	2539	17	0	5	12	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0006	2539	17	0	6	0	1	10	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0007	2539	6	5	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0008	2539	2	0	2	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0009	2478	2	2	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115