JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEIL1_chr15_75342039_75362115	0/0	t0010	2551	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0011	2539	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0012	2539	1	0	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0013	2539	1	0	0	0	1	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0014	2539	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0015	2539	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0016	2539	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0017	2539	1	0	0	0	0	1	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0018	2539	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0019	2539	1	0	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0020	2539	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0021	2539	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0022	2539	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0023	2539	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	t0024	2539	1	0	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL2_chr8_11764710_11792345	0/0	t0001	1703	102	1	13	74	1	13	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0002	1701	47	2	10	32	0	3	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0003	1701	40	2	0	37	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/1	t0004	1701	30	10	11	1	1	6	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0005	1701	23	0	8	7	0	8	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0006	1703	19	1	14	0	3	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0007	1703	16	16	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0008	1701	13	0	0	13	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0009	1701	12	0	7	0	2	3	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0010	1703	12	1	7	0	3	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0011	1704	10	1	7	2	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0012	1701	6	6	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0013	1702	6	1	0	1	0	4	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0014	1701	6	6	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0015	1701	6	6	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0016	1703	6	1	0	0	4	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0017	1701	5	0	0	5	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0018	1700	5	5	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	1/0	t0019	1701	4	3	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0020	1702	4	0	0	4	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0021	1701	4	4	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0022	1703	4	4	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0023	1701	3	0	0	3	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0024	1703	3	0	1	2	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0025	1704	3	0	0	2	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0026	1703	2	0	0	2	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0027	1701	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0028	1702	2	0	0	2	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0029	1702	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0030	1701	2	0	1	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0031	1723	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0032	1703	2	0	0	1	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0033	1700	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0034	1701	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0035	1700	2	1	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345