JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEIL2_chr8_11764710_11792345	0/0	t0036	1702	2	1	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0037	1701	2	0	2	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0038	1700	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0039	1701	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0040	1701	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0041	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0042	1704	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0043	1703	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0044	1703	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0045	1700	1	0	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0046	1701	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0047	1702	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0048	1703	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0049	1703	1	0	1	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0050	1702	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0051	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0052	1724	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0053	1701	1	0	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0054	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0055	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0056	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0057	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0058	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0059	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0060	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0061	1700	1	0	1	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0062	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0063	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0064	1701	1	0	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0065	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0066	1702	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0067	1703	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0068	1701	1	0	1	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0069	1701	1	0	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	t0070	1701	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL3_chr4_177304874_177367936	1/1	t0001	546	268	57	53	108	13	35	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0002	546	49	1	9	38	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0003	546	25	5	8	5	1	6	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0004	546	24	1	0	18	0	5	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0005	546	18	18	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0006	546	8	1	0	7	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0007	546	6	2	3	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0008	546	4	0	0	4	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0009	542	3	0	3	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0010	546	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0011	546	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	t0012	546	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEK10_chr3_27101484_27374383	0/1	t0001	4986	46	1	9	26	3	6	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0002	4982	30	2	11	9	1	7	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0003	4985	25	2	7	10	2	4	copy fasta	NEK10	chr3	27101484	27374383