Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL2BP_chr16_57240259_57258635	0/0	t0010	1478	1	0	0	0	0	1	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0011	1478	1	1	0	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0012	1478	1	0	0	1	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0013	1478	1	0	0	1	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0014	1478	1	0	0	1	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	t0015	1478	1	1	0	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2_chr11_65009160_65027184	1/1	t0001	378	324	88	64	117	16	37	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	t0002	378	8	8	0	0	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	t0003	378	5	0	4	0	0	1	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	t0004	378	3	0	0	3	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL3_chr10_102668731_102719397	0/0	t0001	3285	91	5	13	60	3	10	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0002	3286	75	23	15	21	5	11	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0003	3286	58	10	6	42	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/1	t0004	3285	50	1	13	25	1	9	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0005	3287	35	20	9	4	1	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0006	3284	20	1	11	8	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0007	3286	12	10	0	2	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0008	3285	12	5	2	2	0	3	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0009	3286	10	0	3	5	1	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0010	3284	8	3	0	5	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0011	3284	5	0	0	5	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0012	3285	4	0	0	4	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0013	3286	4	4	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0014	3285	3	0	0	3	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0015	3287	3	3	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0016	3285	2	0	2	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0017	3286	2	2	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0018	3285	2	1	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	1/0	t0019	3286	1	0	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0020	3285	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0021	3285	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0022	3285	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0023	3285	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0024	3285	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0025	3285	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0026	3285	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0027	3285	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0028	3287	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0029	3287	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0030	3287	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0031	3287	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0032	3287	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0033	3287	1	1	0	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0034	3286	1	0	1	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0035	3286	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0036	3286	1	0	1	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0037	3286	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0038	3286	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0039	3286	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0040	3286	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397