JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK10_chr3_27101484_27374383	0/0	t0004	4985	19	11	2	6	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0005	4985	16	4	3	6	1	2	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0006	4985	11	9	2	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0007	4985	11	0	0	11	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0008	4983	6	6	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0009	4985	5	5	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0010	4985	4	3	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0011	4986	4	0	2	0	0	2	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0012	4985	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0013	4984	2	0	0	1	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0014	4985	2	0	0	2	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0015	4992	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0016	4983	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0017	4984	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0018	4986	2	0	0	0	2	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0019	4986	2	0	1	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0020	4986	2	0	0	2	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0021	4986	2	0	0	0	0	2	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	1/0	t0022	4985	2	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0023	4986	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0024	4985	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0025	4986	1	0	0	0	0	1	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0026	4985	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0027	4984	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0028	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0029	4982	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0030	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0031	4985	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0032	4982	1	0	0	0	0	1	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0033	4981	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0034	4982	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0035	4982	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0036	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0037	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0038	4983	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0039	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0040	4983	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0041	4984	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0042	4985	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0043	4985	1	0	0	0	0	1	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0044	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0045	4985	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0046	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0047	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0048	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0049	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0050	4986	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0051	4986	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0052	4984	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0053	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383