JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK10_chr3_27101484_27374383	0/0	t0054	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	t0055	4985	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK11_chr3_131021877_131355465	1/1	t0001	989	287	78	52	115	10	30	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	t0002	984	3	3	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	t0003	1086	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	t0004	989	1	0	0	1	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK1_chr4_169387809_169617583	0/0	t0001	2236	78	14	13	34	5	12	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0002	2236	66	48	4	8	1	5	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	1/0	t0003	2236	46	0	8	31	3	3	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0004	2236	32	3	11	5	5	8	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0005	2236	19	16	3	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0006	2236	5	5	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0007	2236	4	0	0	0	0	4	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0008	2236	3	1	2	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0009	2236	2	2	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/1	t0010	2236	1	0	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0011	2236	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0012	2236	1	0	0	1	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0013	2236	1	0	1	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	t0014	2236	1	0	0	1	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK2_chr1_211657772_211680621	1/1	t0001	797	269	44	44	138	7	34	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0002	798	129	33	27	53	9	7	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0003	798	5	5	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0004	798	5	4	1	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0005	798	3	3	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0006	797	2	0	0	2	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0007	797	1	0	0	0	0	1	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0008	797	1	0	0	1	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	t0009	797	1	1	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK3_chr13_52127647_52164597	1/1	t0001	608	242	75	33	100	6	26	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0002	608	135	9	30	75	6	15	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0003	608	8	0	8	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0004	608	4	0	3	0	0	1	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0005	608	3	2	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0006	608	3	3	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0007	608	2	1	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	t0008	608	1	0	0	1	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK4_chr3_52703444_52775940	0/1	t0001	3527	100	13	22	44	4	16	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0002	3532	68	1	16	45	2	4	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0003	3527	16	2	8	5	1	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0004	3533	12	1	2	5	2	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0005	3550	11	11	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0006	3527	10	8	1	0	1	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0007	3551	10	10	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0008	3530	9	9	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0009	3528	9	0	0	6	1	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0010	3531	8	1	3	4	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0011	3532	6	6	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0012	3529	5	4	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0013	3519	5	0	3	0	0	2	copy fasta	NEK4	chr3	52703444	52775940