JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK4_chr3_52703444_52775940	0/0	t0014	3530	4	4	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	1/0	t0015	3528	4	3	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0016	3526	4	1	0	2	1	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0017	3528	4	0	1	3	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0018	3530	2	0	0	0	0	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0019	3531	2	2	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0020	3531	2	0	0	2	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0021	3526	2	0	0	1	1	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0022	3528	2	0	2	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0023	3527	2	1	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0024	3527	2	1	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0025	3528	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0026	3529	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0027	3528	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0028	3528	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0029	3531	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0030	3532	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0031	3534	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0032	3533	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0033	3528	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0034	3528	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0035	3529	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0036	3526	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0037	3527	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0038	3528	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0039	3526	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0040	3527	1	1	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0041	3518	1	0	0	0	1	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0042	3013	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	t0043	3532	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK5_chr13_52028611_52134073	1/0	t0001	3473	103	22	10	58	1	11	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0002	3476	60	6	13	33	3	5	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0003	3476	22	0	3	17	0	2	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0004	3473	18	1	6	9	1	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0005	3473	10	0	6	0	3	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0006	3470	8	0	8	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0007	3477	7	1	0	4	0	2	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0008	3474	6	2	3	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0009	3474	5	2	0	2	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0010	3473	5	1	1	0	0	3	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0011	3475	5	0	3	2	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0012	3472	4	4	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0013	3472	4	0	0	4	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0014	3473	4	0	3	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0015	3474	4	1	0	3	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0016	3475	4	4	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0017	3472	3	0	0	2	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/1	t0018	3473	3	0	0	0	0	2	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0019	3472	3	3	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0020	3477	3	0	1	1	0	1	copy fasta	NEK5	chr13	52028611	52134073