JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK5_chr13_52028611_52134073	0/0	t0021	3476	3	0	0	0	1	2	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0022	3473	3	3	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0023	3473	2	2	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0024	3473	2	2	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0025	3476	2	2	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0026	3472	2	2	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0027	3473	2	1	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0028	3475	2	0	2	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0029	3477	2	0	0	2	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0030	3473	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0031	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0032	3474	1	0	0	0	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0033	3472	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0034	3475	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0035	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0036	3475	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0037	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0038	3471	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0039	3473	1	0	0	0	1	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0040	3472	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0041	3471	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0042	3463	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0043	3471	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0044	3473	1	0	0	0	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0045	3473	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0046	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0047	3476	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0048	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0049	3474	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0050	3473	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0051	3472	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0052	3473	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0053	3472	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0054	3474	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0055	3476	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0056	3476	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0057	3475	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0058	3476	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0059	3477	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0060	3477	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0061	3476	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	t0062	3476	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK6_chr9_124252949_124358307	1/0	t0001	2527	99	29	21	31	5	12	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/1	t0002	2524	96	19	24	37	7	8	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0003	2524	50	2	9	31	0	8	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0004	2524	29	3	0	24	0	2	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0005	2524	24	3	0	19	0	2	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0006	2527	13	13	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0007	2527	8	1	2	3	1	1	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0008	2524	5	1	2	0	0	2	copy fasta	NEK6	chr9	124252949	124358307