JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK6_chr9_124252949_124358307	0/0	t0009	2524	4	0	2	2	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0010	2527	4	0	4	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0011	2524	3	3	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0012	2527	3	3	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0013	2524	3	3	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0014	2524	3	2	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0015	2527	2	0	2	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0016	2524	2	2	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0017	2524	2	0	0	2	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0018	2524	2	0	0	2	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0019	2523	2	2	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0020	2524	1	0	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0021	2527	1	0	0	0	0	1	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0022	2524	1	0	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0023	2524	1	1	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0024	2524	1	0	0	0	0	1	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0025	2524	1	0	0	1	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0026	2524	1	0	0	0	1	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0027	2527	1	1	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0028	2527	1	1	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0029	2524	1	0	0	1	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0030	2524	1	0	0	1	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0031	2524	1	0	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0032	2524	1	0	0	0	0	1	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	t0033	2526	1	1	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK7_chr1_198151998_198327420	0/0	t0001	3206	149	43	26	62	3	15	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	1/1	t0002	3206	68	15	14	23	5	9	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0003	3206	56	3	10	34	1	8	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0004	3206	33	5	3	24	0	1	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0005	3206	11	1	3	0	3	4	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0006	3206	4	4	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0007	3206	3	3	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0008	3206	2	0	0	2	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0009	3206	2	1	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0010	3206	2	2	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0011	3206	2	2	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0012	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0013	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0014	3206	1	0	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0015	3206	1	0	0	1	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0016	3206	1	0	0	1	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0017	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0018	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0019	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0020	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0021	3206	1	1	0	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0022	3206	1	0	0	1	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0023	3206	1	0	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0024	3206	1	0	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	t0025	3206	1	0	0	0	0	1	copy fasta	NEK7	chr1	198151998	198327420