JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK8_chr17_28723788_28748455	0/1	t0001	1481	79	14	12	38	2	12	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0002	1495	78	2	20	37	3	16	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	1/0	t0003	1495	62	22	10	20	3	6	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0004	1494	29	15	4	10	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0005	1496	23	1	4	14	0	4	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0006	1496	21	9	5	5	0	2	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0007	1481	12	0	7	5	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0008	1493	11	9	2	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0009	1497	7	3	0	3	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0010	1486	6	0	0	5	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0011	1496	5	3	0	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0012	1494	5	0	3	1	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0013	1482	4	0	0	4	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0014	1497	4	1	1	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0015	1493	2	2	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0016	1481	2	0	0	0	0	2	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0017	1495	2	0	0	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0018	1496	2	0	0	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0019	1496	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0020	1494	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0021	1481	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0022	1497	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0023	1495	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0024	1482	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0025	1497	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0026	1495	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0027	1485	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0028	1480	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0029	1496	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0030	1497	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0031	1495	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0032	1497	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0033	1494	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	t0034	1495	1	0	0	0	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK9_chr14_75074353_75132048	0/1	t0001	5335	97	17	26	33	7	13	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0002	5326	39	2	7	21	3	6	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0003	5326	30	13	11	0	1	5	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0004	5326	16	16	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0005	5335	12	0	0	12	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0006	5335	10	0	0	9	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0007	5326	6	6	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0008	5326	6	1	3	0	0	2	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	1/0	t0009	5339	6	3	2	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0010	5326	5	5	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0011	5324	5	5	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0012	5336	4	3	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0013	5335	4	3	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0014	5339	4	1	0	2	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0015	5335	2	0	2	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0016	5324	2	2	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048