JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEK9_chr14_75074353_75132048	0/0	t0017	5326	2	2	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0018	5326	2	2	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0019	5326	2	0	1	0	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0020	5326	2	0	2	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0021	5335	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0022	5326	1	0	0	0	1	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0023	5326	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0024	5335	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0025	5327	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0026	5335	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0027	5335	1	0	0	0	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0028	5335	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0029	5339	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0030	5347	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0031	5324	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0032	5339	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0033	5326	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0034	5327	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0035	5326	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0036	5326	1	0	0	0	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0037	5335	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0038	5326	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0039	5326	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0040	5335	1	0	0	0	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0041	5326	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	t0042	5339	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NELFA_chr4_1977723_2013974	1/0	t0001	612	248	55	46	105	6	35	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	t0002	616	89	10	23	47	3	6	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/1	t0003	620	17	0	11	0	4	1	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	t0004	612	3	3	0	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	t0005	616	1	0	0	0	1	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	t0006	612	1	1	0	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	t0007	616	1	1	0	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFB_chr9_137250327_137278542	0/1	t0001	654	209	49	45	79	10	25	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	1/0	t0002	654	133	30	22	65	4	11	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0003	654	5	4	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0004	654	2	1	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0005	654	2	2	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0006	654	2	2	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0007	654	2	2	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0008	654	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0009	654	1	0	0	0	0	1	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0010	654	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0011	654	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0012	654	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0013	654	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0014	654	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0015	654	1	0	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	t0016	654	1	0	0	0	0	1	copy fasta	NELFB	chr9	137250327	137278542
NELFCD_chr20_58976256_59000113	1/1	t0001	492	193	70	31	62	9	19	copy fasta	NELFCD	chr20	58976256	59000113